Identification of Diverse Bat Alphacoronaviruses and Betacoronaviruses in China Provides New Insights Into the Evolution and Origin of Coronavirus-Related Diseases
Identifieur interne : 000B26 ( Main/Exploration ); précédent : 000B25; suivant : 000B27Identification of Diverse Bat Alphacoronaviruses and Betacoronaviruses in China Provides New Insights Into the Evolution and Origin of Coronavirus-Related Diseases
Auteurs : Yelin Han [République populaire de Chine] ; Jiang Du [République populaire de Chine] ; Haoxiang Su [République populaire de Chine] ; Junpeng Zhang [République populaire de Chine] ; Guangjian Zhu [États-Unis] ; Shuyi Zhang [République populaire de Chine] ; Zhiqiang Wu [République populaire de Chine] ; Qi Jin [République populaire de Chine]Source :
- Frontiers in Microbiology [ 1664-302X ] ; 2019.
Abstract
Outbreaks of severe acute respiratory syndrome (SARS) in 2002, Middle East respiratory syndrome in 2012 and fatal swine acute diarrhea syndrome in 2017 caused serious infectious diseases in humans and in livestock, resulting in serious public health threats and huge economic losses. All such coronaviruses (CoVs) were confirmed to originate from bats. To continuously monitor the epidemic-related CoVs in bats, virome analysis was used to classify CoVs from 831 bats of 15 species in Yunnan, Guangxi, and Sichuan Provinces between August 2016 and May 2017. We identified 11 CoV strains from 22 individual samples of four bat species. Identification of four alpha-CoVs from
Url:
DOI: 10.3389/fmicb.2019.01900
PubMed: 31474969
PubMed Central: 6702311
Affiliations:
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Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Su, Haoxiang" sort="Su, Haoxiang" uniqKey="Su H" first="Haoxiang" last="Su">Haoxiang Su</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Junpeng" sort="Zhang, Junpeng" uniqKey="Zhang J" first="Junpeng" last="Zhang">Junpeng Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University</institution>,<addr-line>Shenyang</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Guangjian" sort="Zhu, Guangjian" uniqKey="Zhu G" first="Guangjian" last="Zhu">Guangjian Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>EcoHealth Alliance</institution>,<addr-line>New York, NY</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuyi" sort="Zhang, Shuyi" uniqKey="Zhang S" first="Shuyi" last="Zhang">Shuyi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University</institution>,<addr-line>Shenyang</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Zhiqiang" sort="Wu, Zhiqiang" uniqKey="Wu Z" first="Zhiqiang" last="Wu">Zhiqiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Jin, Qi" sort="Jin, Qi" uniqKey="Jin Q" first="Qi" last="Jin">Qi Jin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">31474969</idno><idno type="pmc">6702311</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6702311</idno><idno type="RBID">PMC:6702311</idno><idno type="doi">10.3389/fmicb.2019.01900</idno><date when="2019">2019</date><idno type="wicri:Area/Pmc/Corpus">001013</idno><idno type="wicri:explorRef" wicri:stream="Pmc" 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sort="Du, Jiang" uniqKey="Du J" first="Jiang" last="Du">Jiang Du</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Su, Haoxiang" sort="Su, Haoxiang" uniqKey="Su H" first="Haoxiang" last="Su">Haoxiang Su</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Junpeng" sort="Zhang, Junpeng" uniqKey="Zhang J" first="Junpeng" last="Zhang">Junpeng Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University</institution>,<addr-line>Shenyang</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhu, Guangjian" sort="Zhu, Guangjian" uniqKey="Zhu G" first="Guangjian" last="Zhu">Guangjian Zhu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>EcoHealth Alliance</institution>,<addr-line>New York, NY</addr-line>,<country>United States</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Shuyi" sort="Zhang, Shuyi" uniqKey="Zhang S" first="Shuyi" last="Zhang">Shuyi Zhang</name><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Key Laboratory of Zoonosis of Liaoning Province, College of Animal Science and Veterinary Medicine, Shenyang Agricultural University</institution>,<addr-line>Shenyang</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Wu, Zhiqiang" sort="Wu, Zhiqiang" uniqKey="Wu Z" first="Zhiqiang" last="Wu">Zhiqiang Wu</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Jin, Qi" sort="Jin, Qi" uniqKey="Jin Q" first="Qi" last="Jin">Qi Jin</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>NHC Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College</institution>,<addr-line>Beijing</addr-line>,<country>China</country></nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Microbiology</title><idno type="eISSN">1664-302X</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Outbreaks of severe acute respiratory syndrome (SARS) in 2002, Middle East respiratory syndrome in 2012 and fatal swine acute diarrhea syndrome in 2017 caused serious infectious diseases in humans and in livestock, resulting in serious public health threats and huge economic losses. All such coronaviruses (CoVs) were confirmed to originate from bats. To continuously monitor the epidemic-related CoVs in bats, virome analysis was used to classify CoVs from 831 bats of 15 species in Yunnan, Guangxi, and Sichuan Provinces between August 2016 and May 2017. We identified 11 CoV strains from 22 individual samples of four bat species. Identification of four alpha-CoVs from <italic>Scotophilus kuhlii</italic> in Guangxi, which was closely related to a previously reported bat CoV and porcine epidemic diarrhea virus (PEDV), revealed a bat-swine lineage under the genus <italic>Alphacoronavirus</italic>. A recombinant CoV showed that the PEDV probably originated from the CoV of <italic>S. kuhlii</italic>. Another alpha-CoV, α-YN2018, from <italic>Rhinolophus affinis</italic> in Yunnan, suggested that this alpha-CoV lineage had multiple host origins, and α-YN2018 had recombined with CoVs of other bat species over time. We identified five SARS-related CoVs (SARSr-CoVs) in <italic>Rhinolophus</italic> bats from Sichuan and Yunnan and confirmed that angiotensin-converting enzyme 2 usable SARSr-CoVs were continuously circulating in <italic>Rhinolophus</italic> spp. in Yunnan. The other beta-CoV, strain β-GX2018, found in <italic>Cynopterus sphinx</italic> of Guangxi, represented an independently evolved lineage different from known CoVs of <italic>Rousettus</italic> and <italic>Eonycteris</italic> bats. The identification of diverse CoVs here provides new genetic data for understanding the distribution and source of pathogenic CoVs in China.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Balboni, A" uniqKey="Balboni A">A. Balboni</name></author><author><name sortKey="Battilani, M" uniqKey="Battilani M">M. Battilani</name></author><author><name sortKey="Prosperi, S" uniqKey="Prosperi S">S. 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Yang</name></author><author><name sortKey="Shi, W F" uniqKey="Shi W">W. F. Shi</name></author><author><name sortKey="Zhang, W" uniqKey="Zhang W">W. Zhang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Han, Yelin" sort="Han, Yelin" uniqKey="Han Y" first="Yelin" last="Han">Yelin Han</name></noRegion><name sortKey="Du, Jiang" sort="Du, Jiang" uniqKey="Du J" first="Jiang" last="Du">Jiang Du</name><name sortKey="Jin, Qi" sort="Jin, Qi" uniqKey="Jin Q" first="Qi" last="Jin">Qi Jin</name><name sortKey="Su, Haoxiang" sort="Su, Haoxiang" uniqKey="Su H" first="Haoxiang" last="Su">Haoxiang Su</name><name sortKey="Wu, Zhiqiang" sort="Wu, Zhiqiang" uniqKey="Wu Z" first="Zhiqiang" last="Wu">Zhiqiang Wu</name><name sortKey="Zhang, Junpeng" sort="Zhang, Junpeng" uniqKey="Zhang J" first="Junpeng" last="Zhang">Junpeng Zhang</name><name sortKey="Zhang, Shuyi" sort="Zhang, Shuyi" uniqKey="Zhang S" first="Shuyi" last="Zhang">Shuyi Zhang</name></country><country name="États-Unis"><noRegion><name sortKey="Zhu, Guangjian" sort="Zhu, Guangjian" uniqKey="Zhu G" first="Guangjian" last="Zhu">Guangjian Zhu</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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